Foldseek Structural Clustering
Use the Foldseek easy-cluster algorthim to cluster structures using a representative structure.
Overview
The Foldseek easy-cluster algorthim clusters protein structures using a combination of structural and sequence characteristics and allows near full control on search parameters.
Run Foldseek Structural Clustering on Neurosnap
The Foldseek Structural Clustering online webserver allows anybody with a Neurosnap account to run and access Foldseek Structural Clustering, no downloads required. Information submitted through this webserver is kept confidential and never sold to third parties as detailed by our strong Terms of Use and Privacy Policy.
Features
- Structural clustering of PDBs or mmCIFs by creating a structural alignment.
- Includes advanced filters and thresholds to tailor the clustering to your experimental design.
- Provides a collection exportable charts of cluster anchors, cluster members, and overall cluster groups.
Statistics
Neurosnap periodically calculates runtime statistics based on job execution data. These estimates provide a general guideline for how long your job may take, but actual runtimes can vary significantly depending on factors like input size or settings used.
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API Request
Access Foldseek Structural Clustering using the Neurosnap API by sending a request using any programming language with HTTP support. To safely generate an API key, visit the API tab of your overview page.
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Citations
Please cite the original work when using Foldseek Structural Clustering in publications or research outputs.
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Kempen, V. M. et al. "Fast and accurate protein structure search with Foldseek", https://www.nature.com/, 08 May 2023, https://www.nature.com/articles/s41587-023-01773-0. |
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Neurosnap Inc. (2022). Neurosnap: An online platform for computational biology and chemistry. Available at: https://neurosnap.ai/ |